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Publications by Members of the Biology and Medicine College

Last updated 4th January  2007.
Please address comments / enquiries to: J.M.Nicholson@dl.ac.uk

other years 2007 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995

2006

1. Katie Evans, J. Günter Grossmann, Anthony P. Fordham-Skelton and Miroslav Z. Papiz. (2006).
   Small-angle x-ray scattering reveals the solution structure of a bacteriophytochrome in the catalytically active pr state.
   Journal of Molecular Biology 364 (4), 655-666. .

2. Vadim Cherezov, Jeffrey Clogston, Miroslav Z. Papiz and Martin Caffrey. (2006). Room to Move: Crystallizing Membrane Proteins in Swollen Lipidic Mesophases.
   Journal of Molecular Biology 357 (5), 1605-1618.

3. Konstantinos Paraskevopoulos, Svetlana V. Antonyuk, R. Gary Sawers, Robert R. Eady and S. Samar Hasnain. (2006). Insight into Catalysis of Nitrous Oxide Reductase from High-resolution Structures of Resting and Inhibitor-bound Enzyme from Achromobacter cycloclastes.
   Journal of Molecular Biology 362 (1), 55-65

4. Susan Bailey, Doyle Ward, Rebecca Middleton, J. Gunter Grossmann and Patricia C. Zambryski. (2006). Agrobacterium tumefaciens VirB8 structure reveals potential protein-protein interaction sites.
   PNAS 103, 2582-2587.

5. Yang XW, Lee WH, Sobott F, Papagrigoriou E, Robinson CV, Grossmann JG, Sundstrom M, Doyle DA, Elkins JM. (2006).
   Structural basis for protein-protein interactions in the 14-3-3 protein family.
   PNAS 103 (46), 17237-17242.

6. James Nicholson and Colin Reynolds. (2006).
   Chromatin - The Matter of Life and Death.
   Biologist 53 (5), 242-246.

7. Christopher M. Wood, Siriath Sodngam, James M. Nicholson, Stanley J. Lambert, Colin D. Reynolds and John P. Baldwin. (2006). The Oxidised Histone Octamer Does Not Form a H3 Disulphide Bond.
   Biochimica et Biophysica Acta - Proteins and Proteomics 1764 (8), 1356-1362.

8. David K. Cole, Pierre J. Rizkallah, Feng Gao, Neil I. Watson, Jonathan M. Boulter, John I. Bell, Malkit Sami, George F. Gao, Bent K. Jakobsen. (2006). Crystal structure of HLA-A*2402 complexed with a telomerase peptide. European Journal of Immunology 36(1), 170-179.

9. Steven M. Dunn, Pierre J. Rizkallah, Emma Baston, Tara Mahon, Brian Cameron, Ruth Moysey, Feng Gao, Malkit Sami, Jonathan Boulter, Yi Li and Bent K. Jakobsen. (2006). Directed evolution of human T cell receptor CDR2 residues by phage display dramatically enhances affinity for cognate peptide-MHC without increasing apparent cross-reactivity. Protein Science 15, 710-721.

10. Richard W. Strange, Svetlana Antonyuk, Michael A. Hough, Peter A. Doucette, Joan Selverstone Valentine and S. Samar Hasnain. (2006). Variable Metallation of Human Superoxide Dismutase: Atomic Resolution Crystal Structures of Cu-Zn, Zn-Zn and As-isolated Wild-type Enzymes. Journal of Molecular Biology 356 (5), 1152-1162.

11. Barrett, M. L., Harvey, I., Sundararajan, M., Surendran, R., Hall, J. F., Ellis, M. J., Hough, M. A., Strange, R. W., Hillier, I. H. and Hasnain, S. S. (2006). Atomic Resolution Crystal Structures, EXAFS, and Quantum Chemical Studies of Rusticyanin and Its Two Mutants Provide Insight into Its Unusual Properties. Biochemistry 45 (9), 2927-2939.

12. Podjana Chumkhunthod, Sureelak Rodtong, Stan J. Lambert, Anthony P. Fordham-Skelton, Pierre J. Rizkallah, Mark C. Wilkinson and Colin D. Reynolds. (2006). Purification and characterization of an N-acetyl-d-galactosamine-specific lectin from the edible mushroom Schizophyllum commune. Biochimica et Biophysica Acta (BBA) - General Subjects 1760, 326-332.

13. E. J. Maclean, P.J. Rizkallah, J.R. Helliwell (2006). Synchrotron Radiation: Current status and future landscape. European Pharmaceutical Review 2, 71-76.

14. James M. Nicholson and Fritjof C. Körber. (2006).
    High-pressure applications in structural molecular biology.
    Recent Research Developments in Molecular Biology 3, 33-47.

15. James M. Nicholson, Lorna C. Perkins and Fritjof C. Körber. (2006).
    The high-resolution structure of hexameric T6 cobalt insulin: A possible pathway for the T to R transition.
    Recent Research Developments in Molecular Biology 3, 1-17.

16. Christopher M. Wood, James M. Nicholson, Colin D. Reynolds and John P. Baldwin. (2006). Introduction to Chromatin Structure & Function. In Chromatin Structure and Function, Chapter 1, pages 1-19. ISBN: 81-7895-234-3. Transworld Research Network.

17. James M. Nicholson, Christopher M. Wood, Colin D. Reynolds, Stanley J. Lambert and John P. Baldwin. (2006). Inter-Histone Interactions within the Nucleosome: Implications for Octamer Dissociation and Histone-Fold Pairing. In Chromatin Structure and Function, Chapter 4, pages 53-68. ISBN: 81-7895-234-3. Transworld Research Network.

18. James M. Nicholson, Marisa L. Martin-Fernandez, Colin D. Reynolds, Christopher M. Wood and John P. Baldwin. (2006). Future Opportunities for Chromatin Structure-Function Research on the Proposed UK Fourth Generation Light Source (4GLS). In Chromatin Structure and Function, Chapter 7, pages 135-145. ISBN: 81-7895-234-3. Transworld Research Network.

19. S. Al-Assaf, S. Navaratnam, B.J. Parsons and G.O. Phillips. (2006). Chain scission of hyaluronan by carbonate and dichloride radical anions: Potential reactive oxidative species in inflammation? Free Radical Biology and Medicine 40 (11), 2018-2027.

20. Jochen Zimmer, Declan A. Doyle and Joerg Guenter Grossmann. (2006). Structural Characterization and pH Induced Conformational Transition of Full Length KcsA. Biophysical Journal 90, 1752-1766.

21. Paraskevopoulos K, Sundararajan M, Surendran R, Hough MA, Eady RR, Hillier IH, Hasnain SS. (2006). Active site structures and the redox properties of blue copper proteins: atomic resolution structure of azurin II and electronic structure calculations of azurin, plastocyanin and stellacyanin. Dalton Transactions 25, 3067-3076.

22. Webb SED, Needham SR, Roberts SK, Martin-Fernandez ML. (2006). Multidimensional single-molecule imaging in live cells using total-internal-reflection fluorescence microscopy. Optics Letters 31 (14), 2157-2159.

23. German MJ, Pollock HM, Zhao BJ, Tobin MJ, Hammiche A, Bentley A, Cooper LJ, Martin FL, Fullwood NJ. (2006). Characterization of putative stem cell populations in the cornea using synchrotron infrared microspectroscopy. Investigative Opthalmology & Visual Science 47 (6), 2417-2421.

24. Jenkins SL, Almond MJ, Atkinson SDM, Drew MGB, Hollins P, Mortimore JL, Tobin MJ. (2006). The kinetics of the 2 pi+2 pi photodimerisation reactions of single-crystalline derivatives of trans-cinnamic acid: A study by infrared micro spectroscopy. Journal of Molecular Structure 786 (2-3), 220-226.

25. German MJ, Hammiche A, Ragavan N, Tobin MJ, Cooper LJ, Matanhelia SS, Hindley AC, Nicholson CM, Fullwood NJ, Pollock HM, Martin FL. (2006). Infrared spectroscopy with multivariate analysis potentially facilitates the segregation of different types of prostate cell. Biophysical Journal 90 (10), 3783-3795.

26. Yates EA, Terry CJ, Rees C, Rudd TR, Duchesne L, Skidmore MA, Levy R, Thanh NTK, Nichols RJ, Clarke DT, Fernig DG. (2006). Protein-GAG interactions: new surface-based techniques, spectroscopies and nanotechnology probes. Biochemical Society Transactions 34, 427-430.

27. Pasquato N, Berni R, Folli C, Folloni S, Cianci M, Pantano S, Helliwell JR, Zanotti G. (2006). Crystal structure of peach Pru p 3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens. Journal of Molecular Biology 356 (3), 684-694.

28. Hasnain S, Strange R, Antonyuk S, Grossmann G, Ellis M, Hough M, Cianci M, Cole R. (2006). Combined X-ray approach for studying metalloproteins function/misfunction: a powerful approach to metallogenomics. FEBS Journal 272, 87-88 Suppl. 1.

29. Falzon G, Pearson S, Murison R, Hall C, Siu K, Evans A, Rogers K, Lewis R. (2006). Wavelet-based feature extraction applied to small-angle x-ray scattering patterns from breast tissue: a tool for differentiating between tissue types. Physics in Medicine and Biology 51 (10), 2465-2477.

30. Wilkinson SJ, Rogers KD, Hall CJ. (2006). Model fitting in two dimensions to small angle diffraction patterns from soft tissue. Physics in Medicine and Biology 51 (7), 1819-1830.

31. Rogers KD, Hall CJ, Hufton A, Wess TJ, Pinder SE, Siu K. (2006). Reproducibility of cancer diagnosis using hair. International Journal of Cancer 118 (4), 1060-1060.

32. Wang XD, Gleaves M, Meredith D, Allan R, Nave C. (2006). e-science technologies in synchrotron radiation beamline - Remote access and automation (A case study for high throughput protein crystallography). Macromolecular Research 14 (2), 140-145.

33. Lu YL, Longman E, Davis KG, Ortega A, Grossmann JG, Michaelsen TE, de la Torre JG, Harding SE. (2006). Crystallohydrodynamics of protein assemblies: Combining sedimentation, viscometry, and X-ray scattering. Biophysical Journal 91 (5), 1688-1697.

34. Baldock C, Siegler V, Bax DV, Cain SA, Mellody KT, Marson A, Haston JL, Berry R, Wang MC, Grossmann JG, Roessle M, Kielty CM, Wess TJ. (2006). Nanostructure of fibrillin-1 reveals compact conformation of EGF arrays and mechanism for extensibility. PNAS 103 (32), 11922-11927.

35. Lehtio L, Grossmann JG, Kokona B, Fairman R, Goldman A. (2006). Crystal structure of a glycyl radical enzyme from Archaeoglobus fulgidus. Journal of Molecular Biology 357 (1), 221-235.

36. McLaughlin SH, Sobott F, Yaol ZP, Zhang W, Nielsen PR, Grossmann JG, Laue ED, Robinson CV, Jackson SE. (2006). The co-chaperone p23 arrests the Hsp90 ATPase cycle to trap client proteins. Journal of Molecular Biology 356 (3), 746-758.

37. Edge R, d'Ischia M, Land EJ, Napolitano A, Navaratnam S, Panzella L, Pezzella A, Ramsden CA, Riley PA. (2006). Dopaquinone redox exchange with dihydroxyindole and dihydroxyindole carboxylic acid Pigment cell Research 19 (5), 443-450.

38. Quaranta A, Zhang YM, Filippone S, Yang J, Sinay P, Rassat A, Edge R, Navaratnam S, McGarvey DJ, Land EJ, Brettreich M, Hirsch A, Bensasson RV. (2006). Photophysical studies of six amphiphilic 2 : 1 cyclodextrin :[60]fullerene derivatives. Chemical Physics 325 (2), 397-403.

39. Harris RL, Eady RR, Hasnain SS, Sawers RG. (2006).
    Coordinate synthesis of azurin I and copper nitrite reductase in Alcaligenes xylosoxidans during denitrification.
    Archives of Microbiology 186 (3), 241-249.

40. de Melo JS, Rondao R, Burrows HD, Melo MJ, Navaratnam S, Edge R, Voss G. (2006).
    Photophysics of an indigo derivative (keto and leuco structures) with singular properties.
    Journal of Physical Chemistry A 110 (51), 13653-13661.

41. Yong CW, Smith W, Strange RW, Hasnain SS. (2006).
    Structural investigation of human wild-type Cu, Zn superoxide dismutase - a biomolecular case study using DL_POLY_3.
    Molecular Simulation 32 (12-13), 963-969.

42. Changizi V, Wilkinson S, Hall CJ, Grossmann G. (2006).
    A study of the effect of formalin preservation on normal and cancerous breast tissues using small angle X-ray scattering (SAXS).
    Radiation Physics and Chemistry 75 (9), 932-935.